Obtain CpG island, CpG shore, CpG shelf, and open sea annotations

Obtain UCSC CpG islands and build CpG shore, CpG shelf, and open sea annotations. This function is based on annotatr:::build_cpg_annots(); however, it obtains annotations for all genomes in the UCSC genome browser.

Usage

getCpGs(genome = genome)

Arguments

genome

Character specifying the genome

Value

A GRanges object of CpG island, CpG shore, CpG shelf, and open sea annotations

Details

getCpGs

References

Based on annotatr:::build_cpg_annots(), see: https://github.com/rcavalcante/annotatr/blob/master/R/build_annotations.R