Plot a heatmap of normalized individual smoothed methylation value z scores for selected regions (i.e. significant DMRs)
Usage
smoothPheatmap(
bs.filtered.bsseq = bs.filtered.bsseq,
sigRegions = sigRegions,
testCovariate = testCovariate,
...
)Arguments
- bs.filtered.bsseq
Smoothed
bsseqobject- sigRegions
GRangesobject of regions to plot a heatmap for- testCovariate
The factor tested for differences between groups
- ...
Additional arguments passed onto pheatmap