Obtain windows of individual smoothed methylation values
Usage
windows(bs.filtered.bsseq = bs.filtered.bsseq, size = 20000, goi = goi)
Arguments
- bs.filtered.bsseq
Smoothed bsseq object with a testCovariate in pData
- size
The number of bases in the window (default is 2e4, which is 20 Kb)
- goi
A BSgenome object of the genome of interest (i.e. "BSgenome.Hsapiens.UCSC.hg38")
Value
A matrix of smoothed individual methylation values
